3EUS Dna Binding Protein date Oct 10, 2008
title The Crystal Structure Of The Dna Binding Protein From Silici Pomeroyi
authors R.Zhang, H.Li, L.Freeman, A.Joachimiak, Midwest Center For Struc Genomics (Mcsg)
compound source
Molecule: Dna-Binding Protein
Chain: A, B
Engineered: Yes
Organism_scientific: Silicibacter Pomeroyi
Organism_taxid: 89184
Strain: Dss-3
Gene: Gi:56696110, Spo1217
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.164 60.641 68.506 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (3eus.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 3EUS
  • Likely Quarternary Molecular Structure file(s) for 3EUS
  • Structure Factors (109 Kb)
  • Retrieve 3EUS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EUS from S2C, [Save to disk]
  • Re-refined 3eus structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EUS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EUS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EUS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3eus] [3eus_B] [3eus_A]
  • SWISS-PROT database: [Q5LU41]
  • Domain organization of [Q5LU41_SILPO] by SWISSPFAM
  • Domain found in 3EUS: [HTH_XRE ] by SMART
  • Other resources with information on 3EUS
  • Community annotation for 3EUS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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