3EVF	Transferase	date	Oct 13, 2008
title	Crystal Structure Of Me7-Gpppa Complex Of Yellow Fever Virus Methyltransferase And S-Adenosyl-L-Homocysteine
authors	A.A.Thompson, B.J.Geiss, O.B.Peersen
compound		source
Molecule: Rna-Directed Rna Polymerase Ns5 Chain: A Fragment: N-Terminal Domain 1-268 Of Rna-Directed Rna Polym Unp Residues 2507-2772; Ec: 2.1.1.56, 2.7.7.48 Engineered: Yes		Organism_scientific: Yellow Fever Virus Organism_taxid: 11090 Strain: 17d Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkkt7e
symmetry	Space Group: P 65	R_factor 0.207 R_Free 0.227
crystal cell	length a length b length c angle alpha angle beta angle gamma 104.791 104.791 51.842 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand	GTA, SAH	enzyme	Transferase E.C.2.1.1.56 BRENDA
note	3EVF is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Analysis of Flavivirus NS5 Methyltransferase Cap Binding., Geiss BJ, Thompson AA, Andrews AJ, Sons RL, Gari HH, Keenan SM, Peersen OB, J Mol Biol. 2008 Dec 11. PMID:19101564

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (3evf.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 3EVF CSU: Contacts of Structural Units for 3EVF Likely Quarternary Molecular Structure file(s) for 3EVF Structure Factors (1705 Kb) Retrieve 3EVF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EVF from S2C, [Save to disk] Re-refined 3evf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EVF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EVF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EVF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3evf] [3evf_A] SWISS-PROT database: [P03314] Domain organization of [POLG_YEFV1] by SWISSPFAM

Other resources with information on 3EVF

Community annotation for 3EVF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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