3EVJ Hydrolase Inhibitor date Oct 13, 2008
title Intermediate Structure Of Antithrombin Bound To The Natural Pentasaccharide
authors J.A.Huntington, K.J.Belzar
compound source
Molecule: Antithrombin-III
Chain: I, L
Synonym: Atiii
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Alpha Antithrombin From Fresh-Frozen Plasma
symmetry Space Group: P 1 21 1
R_factor 0.231 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.846 87.055 92.383 90.00 106.18 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand BDP, IDS, MAN, NAG, SGN, SUS, ZDO enzyme
Gene
Ontology
ChainFunctionProcessComponent
I, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (3evj.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 3EVJ
  • CSU: Contacts of Structural Units for 3EVJ
  • Likely Quarternary Molecular Structure file(s) for 3EVJ
  • Structure Factors (948 Kb)
  • Retrieve 3EVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EVJ from S2C, [Save to disk]
  • Re-refined 3evj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EVJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EVJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3evj_I] [3evj_L] [3evj]
  • SWISS-PROT database: [P01008]
  • Domain organization of [ANT3_HUMAN] by SWISSPFAM
  • Domain found in 3EVJ: [SERPIN ] by SMART
  • Other resources with information on 3EVJ
  • Community annotation for 3EVJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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