3EVK Oxidoreductase date Oct 13, 2008
title Crystal Structure Of The Metal-Bound Superoxide Dismutase Fr Pyrobaculum Aerophilum
authors S.Lee
compound source
Molecule: Superoxide Dismutase [Fe]
Chain: A, B, C, D
Ec: 1.15.1.1
Engineered: Yes
 Organism_scientific: Pyrobaculum Aerophilum
Organism_taxid: 13773
Gene: Sod, Pae0274
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30
symmetry Space Group: P 32 2 1
R_factor 0.202 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.909 94.909 171.890 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
ligand MN enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • superoxide dismutase activit...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (3evk.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 3EVK
  • CSU: Contacts of Structural Units for 3EVK
  • Structure Factors (1131 Kb)
  • Retrieve 3EVK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EVK from S2C, [Save to disk]
  • Re-refined 3evk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3EVK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EVK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3evk] [3evk_C] [3evk_B] [3evk_D] [3evk_A]
  • SWISS-PROT database: [O93724]
  • Domain organization of [SODF_PYRAE] by SWISSPFAM
    • Other resources with information on 3EVK
  • Community annotation for 3EVK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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