3EVS Cytokine Transferase Receptor date Oct 13, 2008
title Crystal Structure Of The Gdf-5:Bmp Receptor Ib Complex.
authors A.Kotzsch, T.D.Mueller
compound source
Molecule: Growthdifferentiation Factor 5
Chain: B
Fragment: Unp Residues 387-501
Synonym: Gdf-5, Cartilage-Derived Morphogenetic Protein 1, Radotermin;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: U2os
Gene: Cdmp1, Gdf5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Rbsiin25xo

Molecule: Bone Morphogenetic Protein Receptor Type-1b
Chain: C
Fragment: Extracellular Domain
Synonym: Serinethreonine-Protein Kinase Receptor R6, Skr6, Receptor-Like Kinase 6, Alk-6;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Acvrlk6, Bmpr1b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Ad494(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: P 42 21 2
R_factor 0.215 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.455 76.455 82.784 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
B


C


Primary referenceCrystal structure analysis reveals a spring-loaded latch as molecular mechanism for GDF-5-type I receptor specificity., Kotzsch A, Nickel J, Seher A, Sebald W, Muller TD, EMBO J. 2009 Feb 19. PMID:19229295
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (3evs.pdb1.gz) 63 Kb
  • CSU: Contacts of Structural Units for 3EVS
  • Likely Quarternary Molecular Structure file(s) for 3EVS
  • Structure Factors (532 Kb)
  • Retrieve 3EVS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EVS from S2C, [Save to disk]
  • Re-refined 3evs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EVS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EVS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EVS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3evs] [3evs_B] [3evs_C]
  • SWISS-PROT database: [P36898] [P43026]
  • Domain organization of [BMR1B_MOUSE] [GDF5_HUMAN] by SWISSPFAM
  • Domain found in 3EVS: [TGFB ] by SMART
  • Other resources with information on 3EVS
  • Community annotation for 3EVS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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