3EWE	Protein Transport,Structural Protein	date	Oct 14, 2008
title	Crystal Structure Of The Nup85seh1 Complex
authors	S.G.Brohawn, N.C.Leksa, K.R.Rajashankar, T.U.Schwartz
compound		source
Molecule: Nucleoporin Seh1 Chain: A, C Synonym: Nuclear Pore Protein Seh1, Sec13 Homolog 1 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast,Yeast Organism_taxid: 4932 Gene: Seh1, Ygl100w Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcola-Duet
Molecule: Nucleoporin Nup85 Chain: B, D Fragment: Unp Residues 1-564 Synonym: Nuclear Pore Protein Nup85 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast,Yeast Organism_taxid: 4932 Gene: J1624, Nup85, Rat9, Yjr042w Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcola-Duet
symmetry	Space Group: P 41 21 2	R_factor 0.326 R_Free 0.369
crystal cell	length a length b length c angle alpha angle beta angle gamma 112.559 112.559 350.549 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.50 Å
Gene Ontology	Chain Function Process Component A, C nuclear pore nuclear pore outer ring
Primary reference	Structural Evidence for Common Ancestry of the Nuclear Pore Complex and Vesicle Coats., Brohawn SG, Leksa NC, Spear ED, Rajashankar KR, Schwartz TU, Science. 2008 Oct 30. PMID:18974315

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (423 Kb) [Save to disk] Biological Unit Coordinates (3ewe.pdb1.gz) 209 Kb Biological Unit Coordinates (3ewe.pdb2.gz) 209 Kb Biological Unit Coordinates (3ewe.pdb3.gz) 414 Kb CSU: Contacts of Structural Units for 3EWE Likely Quarternary Molecular Structure file(s) for 3EWE Structure Factors (305 Kb) Retrieve 3EWE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EWE from S2C, [Save to disk] Re-refined 3ewe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EWE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EWE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EWE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ewe] [3ewe_B] [3ewe_A] [3ewe_C] [3ewe_D] SWISS-PROT database: [P46673] [P53011] Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB. Domain organization of [NUP85_YEAST] [SEH1_YEAST] by SWISSPFAM Domain found in 3EWE: [WD40 ] by SMART

Other resources with information on 3EWE

Community annotation for 3EWE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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