3EWU	Lyase	date	Oct 16, 2008
title	D312n Mutant Of Human Orotidyl-5'-Monophosphate Decarboxylas Complex With 6-Acetyl-Ump, Covalent Adduct
authors	D.Heinrich, J.Wittmann, U.Diederichsen, M.Rudolph
compound		source
Molecule: Orotidine-5'-Phosphate Decarboxylase Chain: A, B Fragment: Unp Residues 224-480 Synonym: Ompdecase Ec: 4.1.1.23 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Gene: Umps Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Petm-30
symmetry	Space Group: P 1 21 1	R_factor 0.163 R_Free 0.196
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.410 61.690 70.810 90.00 112.86 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	GOL, SO4, UEP	enzyme	Lyase E.C.4.1.1.23 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Lys314 is a nucleophile in non-classical reactions of orotidine-5'-monophosphate decarboxylase., Heinrich D, Diederichsen U, Rudolph MG, Chemistry. 2009 Jul 6;15(27):6619-25. PMID:19472232

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (3ewu.pdb1.gz) 93 Kb LPC: Ligand-Protein Contacts for 3EWU CSU: Contacts of Structural Units for 3EWU Likely Quarternary Molecular Structure file(s) for 3EWU Structure Factors (967 Kb) Retrieve 3EWU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EWU from S2C, [Save to disk] Re-refined 3ewu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EWU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EWU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EWU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ewu_B] [3ewu_A] [3ewu] SWISS-PROT database: [P11172] Domain organization of [PYR5_HUMAN] by SWISSPFAM Domain found in 3EWU: [OMPdecase ] by SMART

Other resources with information on 3EWU

Community annotation for 3EWU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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