3EY0 Dna date Oct 17, 2008
title A New Form Of Dna-Drug Interaction In The Minor Groove Of A Coil
authors J.Pous, T.Moreno, J.A.Subirana, J.L.Campos
compound source
Molecule: 5'-D(Dapdtpdapdtpdapdtpdapdtpdapdt)-3'
Chain: A, B
Engineered: Yes
Synthetic: Yes
Other_details: Synthesized By Using Phosphoramiditine Metho
symmetry Space Group: P 65 2 2
R_factor 0.216 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.789 27.789 311.950 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.52 Å
ligand MG, PNT enzyme
Primary referenceCoiled-coil conformation of a pentamidine-DNA complex., Moreno T, Pous J, Subirana JA, Campos JL, Acta Crystallogr D Biol Crystallogr. 2010 Mar;66(Pt 3):251-7. Epub 2010, Feb 12. PMID:20179336
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (3ey0.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 3EY0
  • CSU: Contacts of Structural Units for 3EY0
  • Structure Factors (26 Kb)
  • Retrieve 3EY0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3EY0 from S2C, [Save to disk]
  • Re-refined 3ey0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3EY0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3EY0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3EY0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ey0_B] [3ey0] [3ey0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3EY0
  • Community annotation for 3EY0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science