3EYZ	Transferase Dna	date	Oct 22, 2008
title	Cocrystal Structure Of Bacillus Fragment Dna Polymerase I Wi Dna (Open Form)
authors	J.J.Warren, E.Y.Wu, A.A.Golosov, M.Karplus, L.S.Beese
compound		source
Molecule: Dna Polymerase I Chain: A Ec: 2.7.7.7 Engineered: Yes Mutation: Yes		Organism_scientific: Bacillus Stearothermophilus Gene: Pola Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Puc
Molecule: 5'-D(Dcpdcpdtpdgpdapdcpdtpdcpdgpdc)-3' Chain: B Engineered: Yes Other_details: Dna Primer Strand		Synthetic: Yes
Molecule: 5'-D(Dapdtpdgpdcpdgpdapdgpdtpdcpdapdgp 3'; Chain: C Engineered: Yes Other_details: Dna Template Strand		Synthetic: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.211 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.663 94.053 106.925 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	FRU, GLC, SO4	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The mechanism of the translocation step in DNA replication by DNA polymerase I: a computer simulation analysis., Golosov AA, Warren JJ, Beese LS, Karplus M, Structure. 2010 Jan 13;18(1):83-93. PMID:20152155

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk] Biological Unit Coordinates (3eyz.pdb1.gz) 108 Kb LPC: Ligand-Protein Contacts for 3EYZ CSU: Contacts of Structural Units for 3EYZ Structure Factors (659 Kb) Retrieve 3EYZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EYZ from S2C, [Save to disk] Re-refined 3eyz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EYZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EYZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EYZ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3eyz_B] [3eyz] [3eyz_C] [3eyz_A] SWISS-PROT database: [P52026] Domain organization of [DPO1_BACST] by SWISSPFAM Domains found in 3EYZ: [35EXOc] [POLAc ] by SMART

Other resources with information on 3EYZ

Community annotation for 3EYZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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