3EZV	Transferase	date	Oct 23, 2008
title	Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
authors	J.R.Kiefer, J.E.Day, N.L.Caspers, K.J.Mathis, K.K.Kretzmer, R.A.W B.A.Reitz, R.A.Stegeman, J.I.Trujillo, W.Huang, A.Thorarensen, L A.Wrightstone, L.Christine, R.Compton, X.Li
compound		source
Molecule: Cell Division Protein Kinase 2 Chain: A Synonym: P33 Protein Kinase Ec: 2.7.11.22 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdk2 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.227 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.602 71.747 71.922 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.99 Å
ligand	EZV BindingDB	enzyme	Transferase E.C.2.7.11.22 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	2-(6-Phenyl-1H-indazol-3-yl)-1H-benzo[d]imidazoles: design and synthesis of a potent and isoform selective PKC-zeta inhibitor., Trujillo JI, Kiefer JR, Huang W, Thorarensen A, Xing L, Caspers NL, Day JE, Mathis KJ, Kretzmer KK, Reitz BA, Weinberg RA, Stegeman RA, Wrightstone A, Christine L, Compton R, Li X, Bioorg Med Chem Lett. 2009 Feb 1;19(3):908-11. Epub 2008 Dec 6. PMID:19097791

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (3ezv.pdb1.gz) 48 Kb LPC: Ligand-Protein Contacts for 3EZV CSU: Contacts of Structural Units for 3EZV Likely Quarternary Molecular Structure file(s) for 3EZV Structure Factors (317 Kb) Retrieve 3EZV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3EZV from S2C, [Save to disk] Re-refined 3ezv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3EZV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3EZV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3EZV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ezv] [3ezv_A] SWISS-PROT database: [P24941] Domain organization of [CDK2_HUMAN] by SWISSPFAM Domain found in 3EZV: [S_TKc ] by SMART

Other resources with information on 3EZV

Community annotation for 3EZV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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