4JM7 1.82 Angstrom resolution crystal structure of holo-(acyl-carrier-protein) synthase (acpS) from Staphylococcus aureus date
authors Halavaty, A.S., Minasov, G., Shuvalova, L., Dubrovska, I., Papazisi, L., Anderson, W.F., CSGID, Center.for.Structural.Genomics.of.Infectious.Diseases.
compound source
symmetry
R_factor
R_Free 0.22479
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.82
note 4JM7 supersedes 3F09
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural characterization and comparison of three acyl-carrier-protein synthases from pathogenic bacteria., Halavaty AS, Kim Y, Minasov G, Shuvalova L, Dubrovska I, Winsor J, Zhou M, Onopriyenko O, Skarina T, Papazisi L, Kwon K, Peterson SN, Joachimiak A, Savchenko A, Anderson WF, Acta Crystallogr D Biol Crystallogr. 2012 Oct;68(Pt 10):1359-70. Epub 2012 Sep, 13. PMID:22993090
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (4jm7.pdb1.gz) 138 Kb
  • CSU: Contacts of Structural Units for 4JM7
  • Structure Factors (275 Kb)
  • Retrieve 4JM7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JM7 from S2C, [Save to disk]
  • Re-refined 4jm7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JM7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JM7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JM7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jm7] [4jm7_A] [4jm7_C] [4jm7_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JM7
  • Community annotation for 4JM7 at PDBWiki (http://pdbwiki.org)

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