4V67 Crystal structure of a translation termination complex formed with release factor RF2. date
authors Korostelev, A., Asahara, H., Lancaster, L., Laurberg, M., Hirschi, A., Noller, H.F.
compound source
symmetry
R_factor
R_Free 0.3164
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
note 4V67 supersedes 3F1E, 3F1F, 3F1G, 3F1H
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO


AS, CS


AT, CT


AU, CU


AX, CX


B0, D0


B1, D1


B3, D3


B4, D4


B6, D6


B7, D7


BE, DE


BF, DF


BN, DN


BO, DO


BQ, DQ


BS, DS


BT, DT


BW, DW


BX, DX


BY, DY


CD, AD


CE, AE


CF, AF


CG, AG


CJ, AJ


CK, AK


CP, AP


CQ, AQ


CR, AR


D2, B2


D5, B5


D8, B8


DD, BD


DG, BG


DH, BH


DI, BI


DK, BK


DP, BP


DR, BR


DU, BU


DV, BV


DZ, BZ


Primary referenceCrystal structure of a translation termination complex formed with release factor RF2., Korostelev A, Asahara H, Lancaster L, Laurberg M, Hirschi A, Zhu J, Trakhanov S, Scott WG, Noller HF, Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19684-9. Epub 2008 Dec 8. PMID:19064930
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2455 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V67
  • Structure Factors (9254 Kb)
  • Retrieve 4V67 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V67 from S2C, [Save to disk]
  • View 4V67 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V67
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v67_CZ] [4v67_CP] [4v67_BI] [4v67_CD] [4v67_DB] [4v67_DO] [4v67_DR] [4v67_CY] [4v67_AG] [4v67_BA] [4v67_BV] [4v67_DT] [4v67_AB] [4v67_DN] [4v67_BR] [4v67_CV] [4v67_DZ] [4v67_BD] [4v67_BQ] [4v67_CR] [4v67_AN] [4v67_D8] [4v67_AO] [4v67_BY] [4v67_AA] [4v67_B4] [4v67_DA] [4v67_AQ] [4v67_DD] [4v67] [4v67_AI] [4v67_DQ] [4v67_B0] [4v67_AZ] [4v67_DX] [4v67_D0] [4v67_CK] [4v67_CF] [4v67_B3] [4v67_CH] [4v67_D5] [4v67_AU] [4v67_DG] [4v67_D1] [4v67_CL] [4v67_AS] [4v67_AR] [4v67_CA] [4v67_D3] [4v67_BK] [4v67_DH] [4v67_CX] [4v67_BG] [4v67_CE] [4v67_B2] [4v67_BU] [4v67_BT] [4v67_CO] [4v67_AL] [4v67_AJ] [4v67_CU] [4v67_BF] [4v67_B8] [4v67_CT] [4v67_CQ] [4v67_AP] [4v67_AM] [4v67_CB] [4v67_BE] [4v67_DE] [4v67_AK] [4v67_AC] [4v67_DV] [4v67_BB] [4v67_BO] [4v67_AX] [4v67_BP] [4v67_DF] [4v67_D4] [4v67_B7] [4v67_BH] [4v67_AV] [4v67_CJ] [4v67_BW] [4v67_B5] [4v67_CC] [4v67_B1] [4v67_AT] [4v67_BN] [4v67_D2] [4v67_DI] [4v67_BS] [4v67_B6] [4v67_CN] [4v67_DY] [4v67_AH] [4v67_CG] [4v67_DK] [4v67_AY] [4v67_CS] [4v67_DP] [4v67_DU] [4v67_D6] [4v67_CI] [4v67_CM] [4v67_DS] [4v67_BX] [4v67_DW] [4v67_AF] [4v67_D7] [4v67_BZ] [4v67_AE] [4v67_AD]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V67: [KH] [KOW] [PCRF] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V67
  • Community annotation for 4V67 at PDBWiki (http://pdbwiki.org)

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