3F2B	Transferase Dna	date	Oct 29, 2008
title	Dna Polymerase Polc From Geobacillus Kaustophilus Complex Wi Dgtp, Mg And Zn
authors	D.R.Davies, R.J.Evans, J.M.Bullard, J.Christensen, L.S.Green, J.W W.K.Ribble, N.Janjic, T.C.Jarvis
compound		source
Molecule: Dna-Directed Dna Polymerase III Alpha Chain Chain: A Fragment: Gkapolc, Delta 1-227, Delta 412-617 Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Geobacillus Kaustophilus Organism_taxid: 1462 Gene: Gk1258, Polc Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: 5'-D(Dcpdapdgpdtpdgpdapdgpdapdcpdgpdgp Apdapdcpdc)-3'; Chain: P Engineered: Yes Other_details: Dna Primer Strand		Synthetic: Yes Other_details: Primer Strand Synthetic Oligonucleotide
Molecule: 5'-D(Dapdtpdapdapdcpdgpdgpdtpdtpdgpdcp Gpdtpdcpdtpdcpdapdcpdtpdg)-3'; Chain: T Engineered: Yes Other_details: Dna Template Strand		Synthetic: Yes Other_details: Template Strand Synthetic Oligonucleotide
symmetry	Space Group: C 2 2 21	R_factor 0.228 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 116.174 140.793 184.524 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.39 Å
ligand	DGT, MG, PO4, ZN	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of PolC reveals unique DNA binding and fidelity determinants., Evans RJ, Davies DR, Bullard JM, Christensen J, Green LS, Guiles JW, Pata JD, Ribble WK, Janjic N, Jarvis TC, Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):20695-700. Epub 2008 Dec 23. PMID:19106298

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk] Biological Unit Coordinates (3f2b.pdb1.gz) 169 Kb LPC: Ligand-Protein Contacts for 3F2B CSU: Contacts of Structural Units for 3F2B Likely Quarternary Molecular Structure file(s) for 3F2B Structure Factors (926 Kb) Retrieve 3F2B in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F2B from S2C, [Save to disk] Re-refined 3f2b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F2B in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F2B

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F2B, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f2b_T] [3f2b_A] [3f2b_P] [3f2b] SWISS-PROT database: [Q5L0J3] Domain organization of [Q5L0J3_GEOKA] by SWISSPFAM Domain found in 3F2B: [POLIIIAc ] by SMART

Other resources with information on 3F2B

Community annotation for 3F2B at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---