3F37 Metal Binding Protein date Oct 30, 2008
title Apoferritin: Complex With 2,6-Dimethylphenol
authors L.S.Vedula, N.J.Economou, M.J.Rossi, R.G.Eckenhoff, P.J.Loll
compound source
Molecule: Ferritin Light Chain
Chain: A
Synonym: Ferritin L Subunit
Organism_scientific: Equus Caballus
Organism_common: Domestic Horse,Equine
Organism_taxid: 9796
Organ: Spleen
symmetry Space Group: F 4 3 2
R_factor 0.174 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.252 181.252 181.252 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.54 Å
ligand 2MY, ACT, CD, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA unitary anesthetic-binding site at high resolution., Vedula LS, Brannigan G, Economou NJ, Xi J, Hall MA, Liu R, Rossi MJ, Dailey WP, Grasty KC, Klein ML, Eckenhoff RG, Loll PJ, J Biol Chem. 2009 Jul 15. PMID:19605349
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (3f37.pdb1.gz) 779 Kb
  • LPC: Ligand-Protein Contacts for 3F37
  • CSU: Contacts of Structural Units for 3F37
  • Likely Quarternary Molecular Structure file(s) for 3F37
  • Structure Factors (864 Kb)
  • Retrieve 3F37 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F37 from S2C, [Save to disk]
  • Re-refined 3f37 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F37 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F37
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F37, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f37] [3f37_A]
  • SWISS-PROT database: [P02791]
  • Domain organization of [FRIL_HORSE] by SWISSPFAM
  • Other resources with information on 3F37
  • Community annotation for 3F37 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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