3F3P	Structural Protein	date	Oct 31, 2008
title	Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space P21212
authors	E.W.Debler, H.Hseo, Y.Ma, G.Blobel, A.Hoelz
compound		source
Molecule: Nucleoporin Seh1 Chain: A, B, E, F, I, J Synonym: Nuclear Pore Protein Seh1, Sec13 Homolog 1 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_taxid: 4932 Gene: Seh1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet-1
Molecule: Nucleoporin Nup85 Chain: C, D, G, H, K, L Fragment: Unp Residues 1-570 Synonym: Nuclear Pore Protein Nup85 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_taxid: 4932 Gene: Nup85, Rat9 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Petduet-1
symmetry	Space Group: P 21 21 2	R_factor 0.261 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 210.239 226.476 190.619 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.20 Å
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component F, A, J, I, E, B nuclear pore nuclear pore outer ring
Primary reference	A fence-like coat for the nuclear pore membrane., Debler EW, Ma Y, Seo HS, Hsia KC, Noriega TR, Blobel G, Hoelz A, Mol Cell. 2008 Dec 26;32(6):815-26. PMID:19111661

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (760 Kb) [Save to disk] Biological Unit Coordinates (3f3p.pdb1.gz) 254 Kb Biological Unit Coordinates (3f3p.pdb2.gz) 256 Kb Biological Unit Coordinates (3f3p.pdb3.gz) 256 Kb LPC: Ligand-Protein Contacts for 3F3P CSU: Contacts of Structural Units for 3F3P Likely Quarternary Molecular Structure file(s) for 3F3P Structure Factors (1653 Kb) Retrieve 3F3P in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F3P from S2C, [Save to disk] Re-refined 3f3p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F3P in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F3P

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F3P, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f3p_G] [3f3p_I] [3f3p_D] [3f3p_C] [3f3p_B] [3f3p_H] [3f3p_L] [3f3p_A] [3f3p] [3f3p_J] [3f3p_E] [3f3p_F] [3f3p_K] SWISS-PROT database: [P46673] [P53011] Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB. Domain organization of [NUP85_YEAST] [SEH1_YEAST] by SWISSPFAM Domain found in 3F3P: [WD40 ] by SMART

Other resources with information on 3F3P

Community annotation for 3F3P at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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