3F6D Transferase date Nov 05, 2008
title Crystal Structure Of A Genetically Modified Delta Class Gst 4) From Anopheles Dirus, F123a, In Complex With S-Hexyl Glu
authors J.Wongsantichon, R.C.Robinson, A.J.Ketterman
compound source
Molecule: Glutathione Transferase Gst1-4
Chain: A, B
Synonym: Adgstd4-4
Ec: 2.5.1.18
Engineered: Yes
Mutation: Yes
Organism_scientific: Anopheles Dirus
Organism_taxid: 7168
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 32 2 1
R_factor 0.173 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.692 49.692 272.943 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand GTX enzyme Transferase E.C.2.5.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural contributions of delta class glutathione transferase active-site residues to catalysis., Wongsantichon J, Robinson RC, Ketterman AJ, Biochem J. 2010 Apr 28;428(1):25-32. PMID:20196771
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (3f6d.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 3F6D
  • CSU: Contacts of Structural Units for 3F6D
  • Structure Factors (556 Kb)
  • Retrieve 3F6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F6D from S2C, [Save to disk]
  • Re-refined 3f6d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F6D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F6D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f6d_A] [3f6d_B] [3f6d]
  • SWISS-PROT database: [Q9GN60]
  • Domain organization of [Q9GN60_9DIPT] by SWISSPFAM
  • Other resources with information on 3F6D
  • Community annotation for 3F6D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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