3F6T Crystal structure of aspartate aminotransferase (E.C. 2.6.1.1) (YP_194538.1) from Lactobacillus acidophilus NCFM at 2.15 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand EDO, LLP, MSE enzyme
Gene YP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (3f6t.pdb1.gz) 177 Kb
  • LPC: Ligand-Protein Contacts for 3F6T
  • CSU: Contacts of Structural Units for 3F6T
  • Likely Quarternary Molecular Structure file(s) for 3F6T
  • Structure Factors (4343 Kb)
  • Retrieve 3F6T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F6T from S2C, [Save to disk]
  • Re-refined 3f6t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F6T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F6T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F6T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f6t] [3f6t_B] [3f6t_A]
  • SWISS-PROT database: [Q5FIG7]
  • Domain organization of [Q5FIG7_LACAC] by SWISSPFAM
  • Other resources with information on 3F6T
  • Community annotation for 3F6T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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