3F6W Dna Binding Protein date Nov 06, 2008
title Xre-Family Like Protein From Pseudomonas Syringae Pv. Tomato Dc3000
authors T.Petrova, M.Cuff, G.Shackleford, M.Gu, A.Joachimiak, Midwest Cen Structural Genomics (Mcsg)
compound source
Molecule: Xre-Family Like Protein
Chain: A, B, C, D, E
Synonym: Dna-Binding Protein
Engineered: Yes
Organism_scientific: Pseudomonas Syringae Pv. Tomato
Organism_taxid: 223283
Strain: Dc3000
Gene: Pspto0717, Pspto_0717
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: C 1 2 1
R_factor 0.191 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.196 48.306 111.424 90.00 98.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand BTB, MSE enzyme
Gene PSPTO
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3f6w.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (3f6w.pdb2.gz) 35 Kb
  • Biological Unit Coordinates (3f6w.pdb3.gz) 34 Kb
  • Biological Unit Coordinates (3f6w.pdb4.gz) 36 Kb
  • Biological Unit Coordinates (3f6w.pdb5.gz) 33 Kb
  • Biological Unit Coordinates (3f6w.pdb6.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3F6W
  • CSU: Contacts of Structural Units for 3F6W
  • Likely Quarternary Molecular Structure file(s) for 3F6W
  • Structure Factors (804 Kb)
  • Retrieve 3F6W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F6W from S2C, [Save to disk]
  • Re-refined 3f6w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F6W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F6W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F6W, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f6w_D] [3f6w_B] [3f6w_A] [3f6w_] [3f6w] [3f6w_E] [3f6w_C]
  • SWISS-PROT database: [Q889N2]
  • Domain organization of [Q889N2_PSESM] by SWISSPFAM
  • Domain found in 3F6W: [HTH_XRE ] by SMART
  • Other resources with information on 3F6W
  • Community annotation for 3F6W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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