3F7D Transcription date Nov 07, 2008
title Sf-1 Lbd Bound By Phosphatidylcholine
authors E.P.Sablin, R.J.Fletterick
compound source
Molecule: Nuclear Receptor Sf-1
Chain: A
Fragment: Unp Residues 219-462
Synonym: Steroidogenic Factor-1, Nuclear Receptor Subfamily A, Member 1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Nr5a1, Ftzf1, Rp23-354g20.5-001
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-Alpha;
Chain: B
Fragment: Unp Residues 137-150
Synonym: Ppar-Gamma Coactivator 1-Alpha, Ppargc-1-Alpha, Pg
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: P 21 21 21
R_factor 0.180 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.895 67.228 82.689 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CAF, P42 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of SF-1 Bound by Different Phospholipids: Evidence for Regulatory Ligands., Sablin EP, Blind RD, Krylova IN, Ingraham JG, Cai F, Williams JD, Fletterick RJ, Ingraham HA, Mol Endocrinol. 2008 Nov 6. PMID:18988706
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (3f7d.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 3F7D
  • CSU: Contacts of Structural Units for 3F7D
  • Likely Quarternary Molecular Structure file(s) for 3F7D
  • Structure Factors (188 Kb)
  • Retrieve 3F7D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F7D from S2C, [Save to disk]
  • Re-refined 3f7d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F7D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F7D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F7D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f7d] [3f7d_] [3f7d_B] [3f7d_A]
  • SWISS-PROT database: [O70343] [P33242]
  • Domain organization of [PRGC1_MOUSE] [STF1_MOUSE] by SWISSPFAM
  • Domain found in 3F7D: [HOLI ] by SMART
  • Other resources with information on 3F7D
  • Community annotation for 3F7D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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