3F7H Apoptosis date Nov 09, 2008
title Structure Of An Ml-Iapxiap Chimera Bound To A Peptidomimeti
authors M.C.Franklin, W.J.Fairbrother, F.Cohen
compound source
Molecule: Baculoviral Iap Repeat-Containing Protein 7
Chain: A, B
Fragment: Ml-Iap Residues 63-172
Synonym: Kidney Inhibitor Of Apoptosis Protein, Kiap, Melan Inhibitor Of Apoptosis Protein, Ml-Iap, Livin, Ring Finger 50;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Birc7, Kiap, Livin, Mliap, Rnf50, Unq5800pro19607pr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 41 21 2
R_factor 0.149 R_Free 0.175
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.048 88.048 73.321 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 419, BTB, EDO, LI, ZN BindingDB enzyme
Primary referenceOrally bioavailable antagonists of inhibitor of apoptosis proteins based on an azabicyclooctane scaffold., Cohen F, Alicke B, Elliott LO, Flygare JA, Goncharov T, Keteltas SF, Franklin MC, Frankovitz S, Stephan JP, Tsui V, Vucic D, Wong H, Fairbrother WJ, J Med Chem. 2009 Mar 26;52(6):1723-30. PMID:19228017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3f7h.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (3f7h.pdb2.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 3F7H
  • CSU: Contacts of Structural Units for 3F7H
  • Likely Quarternary Molecular Structure file(s) for 3F7H
  • Structure Factors (203 Kb)
  • Retrieve 3F7H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F7H from S2C, [Save to disk]
  • Re-refined 3f7h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F7H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F7H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F7H, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f7h] [3f7h_A] [3f7h_B]
  • SWISS-PROT database: [Q96CA5]
  • Domain organization of [BIRC7_HUMAN] by SWISSPFAM
  • Domain found in 3F7H: [BIR ] by SMART
  • Other resources with information on 3F7H
  • Community annotation for 3F7H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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