3F7Y Membrane Protein Metal Transport date Nov 10, 2008
title Kcsa Potassium Channel In The Partially Open State With 17 A At T112
authors L.G.Cuello, V.Jogini, D.M.Cortes, E.Perozo
compound source
Molecule: Antibody Fab Fragment Heavy Chain
Chain: A
 Organism_scientific: Mus Musculus
Organism_taxid: 10090

Molecule: Antibody Fab Fragment Light Chain
Chain: B
Organism_scientific: Mus Musculus
Organism_taxid: 10090

Molecule: Voltage-Gated Potassium Channel
Chain: C
Fragment: Unp Residues 21-124
Engineered: Yes
Mutation: Yes
Organism_scientific: Streptomyces Lividans
Organism_taxid: 1916
Gene: Kcsa, Skc1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl10-Gold
Expression_system_vector_type: Plasmid
Expression_system_vector: Pqe70
symmetry Space Group: I 4
R_factor 0.263 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.626 155.626 73.818 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.40 Å
ligand K enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (3f7y.pdb1.gz) 79 Kb
  • Biological Unit Coordinates (3f7y.pdb2.gz) 310 Kb
  • LPC: Ligand-Protein Contacts for 3F7Y
  • CSU: Contacts of Structural Units for 3F7Y
  • Structure Factors (94 Kb)
  • Retrieve 3F7Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F7Y from S2C, [Save to disk]
  • Re-refined 3f7y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3F7Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3F7Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F7Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f7y_A] [3f7y_C] [3f7y_B] [3f7y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3F7Y: [IG_like] [IGv ] by SMART
    • Other resources with information on 3F7Y
  • Community annotation for 3F7Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science