3F7Z Transferase date Nov 10, 2008
title X-Ray Co-Crystal Structure Of Glycogen Synthase Kinase 3beta Complex With An Inhibitor
authors C.D.Mol, D.R.Dougan
compound source
Molecule: Glycogen Synthase Kinase-3 Beta
Chain: A, B
Fragment: Unp Residues 35-383, Protein Kinase Domain
Synonym: Gsk-3 Beta
Ec: 2.7.11.26
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gsk3b
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.622 117.230 67.351 90.00 102.71 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 34O, PTR BindingDB enzyme Transferase E.C.2.7.11.26 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDesign, synthesis and structure-activity relationships of 1,3,4-oxadiazole derivatives as novel inhibitors of glycogen synthase kinase-3beta., Saitoh M, Kunitomo J, Kimura E, Hayase Y, Kobayashi H, Uchiyama N, Kawamoto T, Tanaka T, Mol CD, Dougan DR, Textor GS, Snell GP, Itoh F, Bioorg Med Chem. 2009 Mar 1;17(5):2017-29. Epub 2009 Jan 15. PMID:19200745
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (3f7z.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (3f7z.pdb2.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3F7Z
  • CSU: Contacts of Structural Units for 3F7Z
  • Likely Quarternary Molecular Structure file(s) for 3F7Z
  • Structure Factors (563 Kb)
  • Retrieve 3F7Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F7Z from S2C, [Save to disk]
  • Re-refined 3f7z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F7Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F7Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F7Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f7z_A] [3f7z_B] [3f7z]
  • SWISS-PROT database: [P49841]
  • Domain organization of [GSK3B_HUMAN] by SWISSPFAM
  • Domain found in 3F7Z: [S_TKc ] by SMART
  • Other resources with information on 3F7Z
  • Community annotation for 3F7Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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