3F80 Hydrolase date Nov 10, 2008
title S)-2-Amino-6-Nitrohexanoic Acid Binds To Human Arginase I T Multiple Nitro-Metal Coordination Interactions In The Binuc Manganese Cluster. Resolution 1.60 A.
authors L.Di Costanzo, D.W.Christianson
compound source
Molecule: Arginase-1
Chain: A, B
Synonym: Type I Arginase, Liver-Type Arginase
Ec: 3.5.3.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arg1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Pet-11d
symmetry Space Group: P 3
R_factor 0.147 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.337 90.337 69.329 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand 6HN, MN enzyme Hydrolase E.C.3.5.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary reference(S)-2-amino-6-nitrohexanoic acid binds to human arginase I through multiple nitro-metal coordination interactions in the binuclear manganese cluster., Zakharian TY, Di Costanzo L, Christianson DW, J Am Chem Soc. 2008 Dec 24;130(51):17254-5. PMID:19032027
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (3f80.pdb1.gz) 153 Kb
  • Biological Unit Coordinates (3f80.pdb2.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 3F80
  • CSU: Contacts of Structural Units for 3F80
  • Likely Quarternary Molecular Structure file(s) for 3F80
  • Structure Factors (597 Kb)
  • Retrieve 3F80 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3F80 from S2C, [Save to disk]
  • Re-refined 3f80 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3F80 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3F80
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3F80, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3f80_B] [3f80_] [3f80] [3f80_A]
  • SWISS-PROT database: [P05089]
  • Domain organization of [ARGI1_HUMAN] by SWISSPFAM
  • Other resources with information on 3F80
  • Community annotation for 3F80 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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