3F92	Ligase	date	Nov 13, 2008
title	Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda ( Interacting Protein 2) M172a Mutant Crystallized At Ph 8.5
authors	R.C.Wilson, R.C.Hughes, J.W.Flatt, E.J.Meehan, J.D.Ng, P.D.Twigg
compound		source
Molecule: Ubiquitin-Conjugating Enzyme E2 K Chain: A Synonym: E2 Ubiquitin-Conjugating Enzyme K,Huntingtin-Inter Protein 2,Hip-2,Ubiquitin Carrier Protein,Ubiquitin-Conjuga Enzyme E2-25 Kda,Ubiquitin-Conjugating Enzyme E2-25k,Ubiqui Protein Ligase; Ec: 2.3.2.23 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2k, Hip2, Lig Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30a
symmetry	Space Group: I 4	R_factor 0.172 R_Free 0.213
crystal cell	length a length b length c angle alpha angle beta angle gamma 134.817 134.817 38.211 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.23 Å
ligand	BME, CA, PG4, TRS	enzyme	Transferase E.C.2.3.2.23 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of full-length ubiquitin-conjugating enzyme E2-25K (huntingtin-interacting protein 2)., Wilson RC, Hughes RC, Flatt JW, Meehan EJ, Ng JD, Twigg PD, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 May 1;65(Pt, 5):440-4. Epub 2009 Apr 24. PMID:19407372

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk] Biological Unit Coordinates (3f92.pdb1.gz) 35 Kb LPC: Ligand-Protein Contacts for 3F92 CSU: Contacts of Structural Units for 3F92 Likely Quarternary Molecular Structure file(s) for 3F92 Structure Factors (396 Kb) Retrieve 3F92 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3F92 from S2C, [Save to disk] Re-refined 3f92 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3F92 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3F92

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3F92, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3f92_A] [3f92] SWISS-PROT database: [P61086] Domain organization of [UBE2K_HUMAN] by SWISSPFAM Domains found in 3F92: [UBA] [UBCc ] by SMART

Other resources with information on 3F92

Community annotation for 3F92 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---