3FAX Hydrolase date Nov 18, 2008
title The Crystal Structure Of Gbs Pullulanase Sap In Complex With Maltotetraose
authors L.J.Gourlay
compound source
Molecule: Reticulocyte Binding Protein
Chain: A
Fragment: N2, N3, A And C Pullulanase Domains, Unp Residues
Engineered: Yes
Organism_scientific: Streptococcus Agalactiae Coh1
Organism_taxid: 342616
Gene: San_1346
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21-B
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.214 102.862 171.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand BGC, CA, CL, GLC enzyme
Gene SAN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGroup B Streptococcus pullulanase crystal structures in the context of a novel strategy for vaccine development., Gourlay LJ, Santi I, Pezzicoli A, Grandi G, Soriani M, Bolognesi M, J Bacteriol. 2009 Mar 27. PMID:19329633
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (3fax.pdb1.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 3FAX
  • CSU: Contacts of Structural Units for 3FAX
  • Likely Quarternary Molecular Structure file(s) for 3FAX
  • Structure Factors (460 Kb)
  • Retrieve 3FAX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FAX from S2C, [Save to disk]
  • Re-refined 3fax structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FAX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FAX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FAX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fax_A] [3fax]
  • SWISS-PROT database: [Q3DB05]
  • Domain organization of [Q3DB05_STRAG] by SWISSPFAM
  • Domain found in 3FAX: [Aamy ] by SMART
  • Other resources with information on 3FAX
  • Community annotation for 3FAX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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