3FBY	Cell Adhesion	date	Nov 20, 2008
title	The Crystal Structure Of The Signature Domain Of Cartilage O Matrix Protein.
authors	K.Tan, J.Lawler
compound		source
Molecule: Cartilage Oligomeric Matrix Protein Chain: A, B, C Fragment: Unp Residues 225-757 Synonym: Comp Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Comp, Comp(Cartilage Oligomeric Matrix Protein) Expression_system: Drosophila Expression_system_taxid: 7215 Expression_system_strain: Drosophila S2 Cell Expression_system_vector_type: Plasmid Expression_system_plasmid: Pmtbipv5-His A
symmetry	Space Group: P 32 2 1	R_factor 0.202 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 192.242 192.242 145.681 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.15 Å
ligand	CA, MAN, NAG, SO4	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	The crystal structure of the signature domain of cartilage oligomeric matrix protein: implications for collagen, glycosaminoglycan and integrin binding., Tan K, Duquette M, Joachimiak A, Lawler J, FASEB J. 2009 Mar 10. PMID:19276170

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk] Biological Unit Coordinates (3fby.pdb1.gz) 90 Kb Biological Unit Coordinates (3fby.pdb2.gz) 89 Kb Biological Unit Coordinates (3fby.pdb3.gz) 90 Kb LPC: Ligand-Protein Contacts for 3FBY CSU: Contacts of Structural Units for 3FBY Likely Quarternary Molecular Structure file(s) for 3FBY Structure Factors (824 Kb) Retrieve 3FBY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FBY from S2C, [Save to disk] Re-refined 3fby structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FBY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FBY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FBY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fby_B] [3fby_A] [3fby_C] [3fby] SWISS-PROT database: [P49747] Domain organization of [COMP_HUMAN] by SWISSPFAM Domain found in 3FBY: [EGF ] by SMART

Other resources with information on 3FBY

Community annotation for 3FBY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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