3FC0 Protein Binding date Nov 20, 2008
title 1.8 A Crystal Structure Of Murine Gitr Ligand Dimer Expresse Drosophila Melanogaster S2 Cells
authors K.Chattopadhyay, U.A.Ramagopal, S.G.Nathenson, S.C.Almo
compound source
Molecule: Gitr Ligand
Chain: A, B
Synonym: Glucocorticoid-Induced-Tumor Necrosis Factor Recep Ligand, Tumor Necrosis Factor (Ligand) Superfamily, Member
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Tnfsf18, Gitrl
Expression_system: Drosophila Melanogaster
Expression_system_taxid: 7227
Expression_system_strain: S2 Cells
Expression_system_plasmid: Pmt-Bip-V5-His
symmetry Space Group: P 21 21 21
R_factor 0.224 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.609 69.293 73.994 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand ACT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary reference1.8 A structure of murine GITR ligand dimer expressed in Drosophila melanogaster S2 cells., Chattopadhyay K, Ramagopal UA, Nathenson SG, Almo SC, Acta Crystallogr D Biol Crystallogr. 2009 May;65(Pt 5):434-9. Epub 2009, Apr 18. PMID:19390148
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3fc0.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3FC0
  • CSU: Contacts of Structural Units for 3FC0
  • Likely Quarternary Molecular Structure file(s) for 3FC0
  • Structure Factors (397 Kb)
  • Retrieve 3FC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FC0 from S2C, [Save to disk]
  • Re-refined 3fc0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FC0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FC0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FC0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fc0] [3fc0_A] [3fc0_B]
  • SWISS-PROT database: [Q7TS55]
  • Domain organization of [Q7TS55_MOUSE] by SWISSPFAM
  • Other resources with information on 3FC0
  • Community annotation for 3FC0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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