3FG1 Oxidoreductase date Dec 04, 2008
title Crystal Structure Of Delta413-417:Gs Lox
authors D.B.Neau, M.E.Newcomer
compound source
Molecule: Allene Oxide Synthase-Lipoxygenase Protein
Chain: A, B, C, D
Fragment: Arachidonate 8r-Lipoxygenase: Unp Residues 374-10
Synonym: Allene Oxide Synthase, Hydroperoxidehydrase, Arach Lipoxygenase;
Ec: 1.13.11.40
Engineered: Yes
Mutation: Yes
Organism_scientific: Plexaura Homomalla
Organism_common: Black Sea Rod
Organism_taxid: 47982
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 1 21 1
R_factor 0.174 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.982 170.224 104.497 90.00 95.88 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand ACY, CA, CL, FE2, GOL enzyme Oxidoreductase E.C.1.13.11.40 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe 1.85 A structure of an 8R-lipoxygenase suggests a general model for lipoxygenase product specificity., Neau DB, Gilbert NC, Bartlett SG, Boeglin W, Brash AR, Newcomer ME, Biochemistry. 2009 Aug 25;48(33):7906-15. PMID:19594169
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (504 Kb) [Save to disk]
  • Biological Unit Coordinates (3fg1.pdb1.gz) 132 Kb
  • Biological Unit Coordinates (3fg1.pdb2.gz) 127 Kb
  • Biological Unit Coordinates (3fg1.pdb3.gz) 131 Kb
  • Biological Unit Coordinates (3fg1.pdb4.gz) 127 Kb
  • Biological Unit Coordinates (3fg1.pdb5.gz) 493 Kb
  • LPC: Ligand-Protein Contacts for 3FG1
  • CSU: Contacts of Structural Units for 3FG1
  • Structure Factors (2343 Kb)
  • Retrieve 3FG1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FG1 from S2C, [Save to disk]
  • Re-refined 3fg1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FG1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FG1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FG1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fg1_C] [3fg1_B] [3fg1_D] [3fg1_A] [3fg1]
  • SWISS-PROT database: [O16025]
  • Domain organization of [AOSL_PLEHO] by SWISSPFAM
  • Domain found in 3FG1: [LH2 ] by SMART
  • Other resources with information on 3FG1
  • Community annotation for 3FG1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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