3FGH	Transcription	date	Dec 06, 2008
title	Human Mitochondrial Transcription Factor A Box B
authors	T.A.Gangelhoff, P.Mungalachetty, J.Nix, M.E.A.Churchill
compound		source
Molecule: Transcription Factor A, Mitochondrial Chain: A Fragment: Hmg Box 2 Synonym: Mttfa, Mitochondrial Transcription Factor 1, Mttf1 Transcription Factor 6-Like 2; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Man Organism_taxid: 9606 Gene: Tfam, Tcf6l2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)+Codon Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdest15
symmetry	Space Group: C 2 2 21	R_factor 0.188 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 30.280 99.350 51.910 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.35 Å
ligand	CD, CL, NA	enzyme
note	3FGH is a representative structure
Primary reference	Structural analysis and DNA binding of the HMG domains of the human mitochondrial transcription factor A., Gangelhoff TA, Mungalachetty PS, Nix JC, Churchill ME, Nucleic Acids Res. 2009 Mar 20. PMID:19304746

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk] Biological Unit Coordinates (3fgh.pdb1.gz) 54 Kb Biological Unit Coordinates (3fgh.pdb2.gz) 28 Kb LPC: Ligand-Protein Contacts for 3FGH CSU: Contacts of Structural Units for 3FGH Likely Quarternary Molecular Structure file(s) for 3FGH Structure Factors (968 Kb) Retrieve 3FGH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FGH from S2C, [Save to disk] Re-refined 3fgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FGH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FGH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FGH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fgh_A] [3fgh] SWISS-PROT database: [Q00059] Domain organization of [TFAM_HUMAN] by SWISSPFAM Domain found in 3FGH: [HMG ] by SMART

Other resources with information on 3FGH

Community annotation for 3FGH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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