3FGR	Hydrolase	date	Dec 08, 2008
title	Two Chain Form Of The 66.3 Kda Protein At 1.8 Angstroem
authors	K.Lakomek, A.Dickmanns, R.Ficner
compound		source
Molecule: Putative Phospholipase B-Like 2 28 Kda Form Chain: A Fragment: N-Terminal Domain, Residues 47-248 Synonym: Lamina Ancestor Homolog 2, Lama-Like Protein 2, 76 Protein, P76, 66.3 Kda Protein; Ec: 3.1.1.- Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Strain: C3hrv Gene: Aag44101 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Ht1080 Expression_system_cell: Fibrosarcoma Cell Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcdna3.1hygro(+)
Molecule: Putative Phospholipase B-Like 2 40 Kda Form Chain: B Fragment: C-Terminal Domain, Residues 249-594 Synonym: Lamina Ancestor Homolog 2, Lama-Like Protein 2, 76 Protein, P76, 66.3 Kda Protein; Ec: 3.1.1.- Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Strain: C3hrv Gene: Aag44101 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Ht1080 Expression_system_cell: Fibrosarcoma Cell Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcdna3.1hygro(+)
symmetry	Space Group: C 1 2 1	R_factor 0.152 R_Free 0.182
crystal cell	length a length b length c angle alpha angle beta angle gamma 148.737 89.560 64.811 90.00 98.69 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	ACT, GOL, NA, NAG, OCS, XE	enzyme	Hydrolase E.C.3.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Initial insight into the function of the lysosomal 66.3 kDa protein from mouse by means of X-ray crystallography., Lakomek K, Dickmanns A, Kettwig M, Urlaub H, Ficner R, Lubke T, BMC Struct Biol. 2009 Aug 25;9:56. PMID:19706171

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk] Biological Unit Coordinates (3fgr.pdb1.gz) 101 Kb LPC: Ligand-Protein Contacts for 3FGR CSU: Contacts of Structural Units for 3FGR Structure Factors (672 Kb) Retrieve 3FGR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FGR from S2C, [Save to disk] Re-refined 3fgr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FGR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FGR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FGR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fgr_B] [3fgr] [3fgr_A] SWISS-PROT database: [Q3TCN2] Domain organization of [PLBL2_MOUSE] by SWISSPFAM

Other resources with information on 3FGR

Community annotation for 3FGR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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