3FHF Dna Repair, Hydrolase, Lyase date Dec 09, 2008
title Crystal Structure Of Methanocaldococcus Jannaschii 8-Oxoguan Glycosylase (Mjogg)
authors F.Faucher, S.Doublie
compound source
Molecule: N-Glycosylasedna Lyase
Chain: A
Synonym: Mjogg; 8-Oxoguanine Dna Glycosylase; Dna-(Apurinic Apyrimidinic Site) Lyase; Ap Lyase;
Ec: 3.2.2.-, 4.2.99.18
Engineered: Yes
Organism_scientific: Methanocaldococcus Jannaschii
Organism_taxid: 2190
Gene: 1451601, Mj0724, Ogg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: C 1 2 1
R_factor 0.202 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
89.440 37.840 75.010 90.00 116.08 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MSE enzyme Hydrolase E.C.3.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of two archaeal 8-oxoguanine DNA glycosylases provide structural insight into guanine/8-oxoguanine distinction., Faucher F, Duclos S, Bandaru V, Wallace SS, Doublie S, Structure. 2009 May 13;17(5):703-12. PMID:19446526
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3fhf.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3FHF
  • CSU: Contacts of Structural Units for 3FHF
  • Likely Quarternary Molecular Structure file(s) for 3FHF
  • Structure Factors (1890 Kb)
  • Retrieve 3FHF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FHF from S2C, [Save to disk]
  • Re-refined 3fhf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FHF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FHF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FHF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fhf] [3fhf_A]
  • SWISS-PROT database: [Q58134]
  • Domain organization of [OGG1_METJA] by SWISSPFAM
  • Domain found in 3FHF: [ENDO3c ] by SMART
  • Other resources with information on 3FHF
  • Community annotation for 3FHF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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