3FIF	Structural Genomics, Unknown Function	date	Dec 11, 2008
title	Crystal Structure Of The Ygdr Protein From E.Coli. Northeast Structural Genomics Target Er382a.
authors	A.P.Kuzin, M.Su, J.Seetharaman, P.Rossi, C.X.Chen, M.Jiang, K.Cunn L.Ma, R.Xiao, J.C.Liu, M.Baran, G.V.T.Swapna, T.B.Acton, B.Rost, G.T.Montelione, J.F.Hunt, L.Tong, Northeast Structural Genomic Consortium (Nesg)
compound		source
Molecule: Uncharacterized Lipoprotein Ygdr Chain: A, B, C, D, E, F, G, H Engineered: Yes		Organism_scientific: Escherichia Coli K-12 Organism_taxid: 83333 Gene: Ygdr, B2833, Jw2801 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) + Magic
Molecule: Uncharacterized Ligand Chain: Y		Organism_scientific: Escherichia Coli Organism_taxid: 562
symmetry	Space Group: P 1	R_factor 0.238 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 41.017 41.056 73.748 99.95 102.33 104.40
method	X-Ray Diffraction	resolution	2.70 Å
ligand	MSE	enzyme
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (3fif.pdb1.gz) 10 Kb Biological Unit Coordinates (3fif.pdb2.gz) 10 Kb Biological Unit Coordinates (3fif.pdb3.gz) 11 Kb Biological Unit Coordinates (3fif.pdb4.gz) 11 Kb Biological Unit Coordinates (3fif.pdb5.gz) 10 Kb Biological Unit Coordinates (3fif.pdb6.gz) 11 Kb Biological Unit Coordinates (3fif.pdb7.gz) 11 Kb Biological Unit Coordinates (3fif.pdb8.gz) 10 Kb Biological Unit Coordinates (3fif.pdb9.gz) 2 Kb LPC: Ligand-Protein Contacts for 3FIF CSU: Contacts of Structural Units for 3FIF Likely Quarternary Molecular Structure file(s) for 3FIF Structure Factors (172 Kb) Retrieve 3FIF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FIF from S2C, [Save to disk] Re-refined 3fif structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FIF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FIF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FIF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fif_F] [3fif_H] [3fif_A] [3fif_D] [3fif_Y] [3fif] [3fif_E] [3fif_B] [3fif_G] [3fif_C] SWISS-PROT database: [P65294] Domain organization of [YGDR_ECOLI] by SWISSPFAM

Other resources with information on 3FIF

Community annotation for 3FIF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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