4V69	Ternary complex-bound E.coli 70S ribosome.	date
authors	Villa, E., Sengupta, J., Trabuco, L.G., LeBarron, J., Baxter, W.T., Shaikh, T.R., Grassucci, R.A., Nissen, P., Ehrenberg, M., Schulten, K., Frank, J.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	6.70
note	4V69 supersedes 3FIH, 3FIK
Gene Ontology	Chain Function Process Component AB AC AD AE AF AG AH AI AJ AK AL AM AN AO AP nuclease activity endonuclease activity endodeoxyribonuclease activi... AQ AR AS AT ornithine decarboxylase inhi... AU AZ B0 B1 B2 B3 B4 B5 BC BD BE BF BG BH BI BJ BK BL BM BN BO BP BQ translation repressor activi... BR BS BT BU BV BW BX BY BZ
Primary reference	Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis., Villa E, Sengupta J, Trabuco LG, LeBarron J, Baxter WT, Shaikh TR, Grassucci RA, Nissen P, Ehrenberg M, Schulten K, Frank J, Proc Natl Acad Sci U S A. 2009 Jan 27;106(4):1063-8. Epub 2009 Jan 2. PMID:19122150

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1474 Kb) [Save to disk] CSU: Contacts of Structural Units for 4V69 Retrieve 4V69 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4V69 from S2C, [Save to disk]

View 4V69 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4V69

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4v69_AZ] [4v69_B1] [4v69_BF] [4v69_AE] [4v69_B0] [4v69_B3] [4v69_AS] [4v69_AP] [4v69_BR] [4v69_AD] [4v69_AM] [4v69_BA] [4v69_BI] [4v69_AK] [4v69_AL] [4v69_AI] [4v69_AV] [4v69_AO] [4v69_AF] [4v69_BJ] [4v69_BO] [4v69] [4v69_BG] [4v69_AN] [4v69_BQ] [4v69_AB] [4v69_B2] [4v69_AY] [4v69_BW] [4v69_B5] [4v69_BH] [4v69_AU] [4v69_BD] [4v69_AH] [4v69_B4] [4v69_BP] [4v69_AC] [4v69_BC] [4v69_AT] [4v69_BM] [4v69_AG] [4v69_BE] [4v69_BU] [4v69_BB] [4v69_BK] [4v69_AJ] [4v69_BX] [4v69_AR] [4v69_BN] [4v69_BT] [4v69_BL] [4v69_AA] [4v69_AW] [4v69_BZ] [4v69_AX] [4v69_BY] [4v69_AQ] [4v69_BS] [4v69_BV] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4V69: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

Other resources with information on 4V69

Community annotation for 4V69 at PDBWiki (http://pdbwiki.org)

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