3FKS Hydrolase date Dec 17, 2008
title Yeast F1 Atpase In The Absence Of Bound Nucleotides
authors V.Kabaleeswaran, J.Symersky, H.Shen, J.E.Walker, A.G.W.Leslie, D.
compound source
Molecule: Atp Synthase Subunit Alpha, Mitochondrial
Chain: A, B, C, J, K, L, S, T, U
Fragment: Unp Residues 36-545
Ec: 3.6.3.14
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Organelle: Mitochondria

Molecule: Atp Synthase Subunit Beta, Mitochondrial
Chain: D, E, F, M, N, O, V, W, X
Fragment: Unp Residues 34-511
Ec: 3.6.3.14
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Atp2, J2041, Yjr121w
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Yeast
Expression_system_taxid: 4932
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prs314

Molecule: Atp Synthase Subunit Gamma, Mitochondrial
Chain: G, P, Y
Fragment: Unp Residues 34-311
Ec: 3.6.3.14

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Organelle: Mitochondria

Molecule: Atp Synthase Subunit Delta, Mitochondrial
Chain: H, Q, Z
Fragment: Unp Residues 23-160
Ec: 3.6.3.14

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Organelle: Mitochondria

Molecule: Atp Synthase Subunit Epsilon, Mitochondrial
Chain: I, R, 1
Fragment: Unp Residues 2-62
Ec: 3.6.3.14

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Organelle: Mitochondria
symmetry Space Group: P 1 21 1
R_factor 0.242 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.934 290.487 188.700 90.00 101.75 90.00
method X-Ray Diffractionresolution 3.59 Å
ligand PO4 enzyme Hydrolase E.C.3.6.3.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
1, R, I


F, N, E, V, M, O, W, X, D


S, T, K, C, L, A, J, B, U


Y, P, G


Z, Q, H


Primary referenceAsymmetric structure of the yeast F1 ATPase in the absence of bound nucleotides., Kabaleeswaran V, Shen H, Symersky J, Walker JE, Leslie AG, Mueller DM, J Biol Chem. 2009 Feb 20. PMID:19233840
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1428 Kb) [Save to disk]
  • Biological Unit Coordinates (3fks.pdb1.gz) 501 Kb
  • Biological Unit Coordinates (3fks.pdb2.gz) 484 Kb
  • Biological Unit Coordinates (3fks.pdb3.gz) 467 Kb
  • LPC: Ligand-Protein Contacts for 3FKS
  • CSU: Contacts of Structural Units for 3FKS
  • Likely Quarternary Molecular Structure file(s) for 3FKS
  • Structure Factors (1235 Kb)
  • Retrieve 3FKS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FKS from S2C, [Save to disk]
  • Re-refined 3fks structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FKS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FKS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FKS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fks_X] [3fks_U] [3fks_M] [3fks_R] [3fks_E] [3fks_P] [3fks_S] [3fks_B] [3fks_I] [3fks_A] [3fks_L] [3fks_T] [3fks_C] [3fks_Z] [3fks_K] [3fks_W] [3fks_1] [3fks_G] [3fks_N] [3fks_V] [3fks_D] [3fks_Q] [3fks] [3fks_Y] [3fks_F] [3fks_O] [3fks_J] [3fks_H]
  • SWISS-PROT database: [P21306] [P07251] [P00830] [Q12165] [P38077]
  • Belongs to the h(+)- or na(+)-translocating f-type, v-type and a-type atpase (f-atpase) superfamily according to TCDB.
  • Domain organization of [ATP5E_YEAST] [ATPA_YEAST] [ATPB_YEAST] [ATPD_YEAST] [ATPG_YEAST] by SWISSPFAM
  • Domain found in 3FKS: [AAA ] by SMART
  • Other resources with information on 3FKS
  • Community annotation for 3FKS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science