3FLO	Transferase	date	Dec 19, 2008
title	Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast D Polymerase Alpha In Complex With Its B Subunit
authors	S.N.Klinge, L.Pellegrini
compound		source
Molecule: Dna Polymerase Alpha Subunit B Chain: A, C, E, G Fragment: Unp Residues 246-705 Synonym: Dna Polymerase I Subunit B, Dna Polymerase Alpha:P Complex P86 Subunit, Pol Alpha-Primase Complex P86 Subunit, Polymerase-Primase Complex P74 Subunit; Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Pol12 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Rosetta2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Rsf1-Duet
Molecule: Dna Polymerase Alpha Catalytic Subunit A Chain: I, J, K, L Fragment: N-Terminal Parts Of Chains B, D, F, H Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Pol1, Cdc17 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Rosetta2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Rsf1-Duet
Molecule: Dna Polymerase Alpha Catalytic Subunit A Chain: B, D, F, H Fragment: Cysteine-Rich C-Terminal Domain, Unp Residues 126 Synonym: Dna Polymerase I Subunit A, Dna Polymerase Alpha:P Complex P180 Subunit, Pol Alpha-Primase Complex P180 Subuni Polymerase-Primase Complex P180 Subunit; Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Pol1, Cdc17 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Rosetta2 Expression_system_vector_type: Plasmid Expression_system_plasmid: Rsf1-Duet
symmetry	Space Group: P 1 21 1	R_factor 0.191 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 85.411 142.633 175.255 90.00 102.33 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	SO4, ZN	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A, E, C, G F, B, H, D
Primary reference	3D architecture of DNA Pol alpha reveals the functional core of multi-subunit replicative polymerases., Klinge S, Nunez-Ramirez R, Llorca O, Pellegrini L, EMBO J. 2009 Jul 8;28(13):1978-87. Epub 2009 Jun 4. PMID:19494830

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (855 Kb) [Save to disk] Biological Unit Coordinates (3flo.pdb1.gz) 216 Kb Biological Unit Coordinates (3flo.pdb2.gz) 217 Kb Biological Unit Coordinates (3flo.pdb3.gz) 218 Kb Biological Unit Coordinates (3flo.pdb4.gz) 215 Kb LPC: Ligand-Protein Contacts for 3FLO CSU: Contacts of Structural Units for 3FLO Likely Quarternary Molecular Structure file(s) for 3FLO Structure Factors (7480 Kb) Retrieve 3FLO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FLO from S2C, [Save to disk] Re-refined 3flo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FLO in 3D

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Visual 3D analysis of 3FLO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FLO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3flo_B] [3flo_F] [3flo] [3flo_D] [3flo_C] [3flo_L] [3flo_K] [3flo_E] [3flo_G] [3flo_H] [3flo_I] [3flo_J] [3flo_A] SWISS-PROT database: [P38121] [P13382] Domain organization of [DPOA2_YEAST] [DPOA_YEAST] by SWISSPFAM

Other resources with information on 3FLO

Community annotation for 3FLO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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