3FLV Lipid Binding Protein date Dec 19, 2008
title The Crystal Structure Of Human Acyl-Coenzymea Binding Domain Containing 5
authors E.Ugochukwu, A.Roos, W.W.Yue, N.Shafqat, E.Salah, P.Savitsky, J.R. F.Von Delft, C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edwards, U.Oppermann, Structural Genomics Consortium (Sgc)
compound source
Molecule: Acyl-Coa-Binding Domain-Containing Protein 5
Chain: A, B
Fragment: Acb
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acbd5, Kiaa1996
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 1 2 1
R_factor 0.212 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.751 34.064 54.877 90.00 102.16 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand COA, STE, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (3flv.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (3flv.pdb2.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 3FLV
  • CSU: Contacts of Structural Units for 3FLV
  • Likely Quarternary Molecular Structure file(s) for 3FLV
  • Structure Factors (351 Kb)
  • Retrieve 3FLV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FLV from S2C, [Save to disk]
  • Re-refined 3flv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FLV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FLV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FLV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3flv_A] [3flv] [3flv_B]
  • SWISS-PROT database: [Q5T8D3]
  • Domain organization of [ACBD5_HUMAN] by SWISSPFAM
  • Other resources with information on 3FLV
  • Community annotation for 3FLV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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