3FP3 Transport Protein date Jan 03, 2009
title Crystal Structure Of Tom71
authors J.Li, X.Qian, J.Hu, B.Sha
compound source
Molecule: Tpr Repeat-Containing Protein Yhr117w
Chain: A
Fragment: Unp Residues 107-639
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Yhr117w
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.187 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.901 83.416 109.114 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
ligand CL, SO4 enzyme
Primary referenceMolecular chaperone Hsp70/Hsp90 prepares the mitochondrial outer membrane translocon receptor Tom71 for preprotein loading., Li J, Qian X, Hu J, Sha B, J Biol Chem. 2009 Aug 28;284(35):23852-9. Epub 2009 Jul 6. PMID:19581297
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (3fp3.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 3FP3
  • CSU: Contacts of Structural Units for 3FP3
  • Likely Quarternary Molecular Structure file(s) for 3FP3
  • Structure Factors (399 Kb)
  • Retrieve 3FP3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FP3 from S2C, [Save to disk]
  • Re-refined 3fp3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FP3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FP3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FP3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fp3_A] [3fp3]
  • SWISS-PROT database: [P38825]
  • Domain organization of [TOM71_YEAST] by SWISSPFAM
  • Domain found in 3FP3: [TPR ] by SMART
    • Other resources with information on 3FP3
  • Community annotation for 3FP3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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