3FPB Hydrolase date Jan 05, 2009
title The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound To Cyclopiazonic Acid With Atp
authors K.Moncoq, J.P.Morth, M.Bublitz, M.Laursen, P.Nissen, H.S.Young
compound source
Molecule: Sarcoplasmicendoplasmic Reticulum Calcium Atpase
Chain: A
Synonym: Serca1, Calcium Pump 1, Calcium-Transporting Atpas Sarcoplasmic Reticulum Type, Fast Twitch Skeletal Muscle Is Ca(2+)-Atpase 1, Endoplasmic Reticulum Class 12 Ca(2+) Atp
Ec: 3.6.3.8
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Twitch Skeletal Muscle
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
175.360 69.870 143.500 90.00 107.16 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand ATP, CZA, K, MF4, MG enzyme Hydrolase E.C.3.6.3.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCyclopiazonic acid is complexed to a divalent metal ion when bound to the sarcoplasmic reticulum Ca2+-ATPase., Laursen M, Bublitz M, Moncoq K, Olesen C, Moeller JV, Young HS, Nissen P, Morth JP, J Biol Chem. 2009 Mar 16. PMID:19289472
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (337 Kb) [Save to disk]
  • Biological Unit Coordinates (3fpb.pdb1.gz) 329 Kb
  • LPC: Ligand-Protein Contacts for 3FPB
  • CSU: Contacts of Structural Units for 3FPB
  • Likely Quarternary Molecular Structure file(s) for 3FPB
  • Structure Factors (426 Kb)
  • Retrieve 3FPB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FPB from S2C, [Save to disk]
  • Re-refined 3fpb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3FPB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3FPB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FPB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fpb_A] [3fpb]
  • SWISS-PROT database: [P04191]
  • Belongs to the p-type atpase (p-atpase) superfamily according to TCDB.
  • Domain organization of [AT2A1_RABIT] by SWISSPFAM
  • Domain found in 3FPB: [Cation_ATPase_N ] by SMART
    • Other resources with information on 3FPB
  • Community annotation for 3FPB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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