3FS0	Rna	date	Jan 08, 2009
title	Class II Ligase Ribozyme Product-Template Duplex, Structure
authors	J.N.Pitt, A.R.Ferre-D'Amare
compound		source
Molecule: 5'-R(Gpgpupgpapgpgpcpupg)-3' Chain: A Engineered: Yes Other_details: Template Strand Of Class II Ligase A4-11		Synthetic: Yes
Molecule: 5'-R(Cpcpapgpupcpgpgpapapc)-3' Chain: B Engineered: Yes Other_details: Product Strand Of Class II Ligase A4-11, Sin Stranded Rna With One 2'-5' Linkage		Synthetic: Yes
symmetry	Space Group: P 31	R_factor 0.208 R_Free 0.234
crystal cell	length a length b length c angle alpha angle beta angle gamma 30.040 30.040 59.666 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	MG	enzyme
Primary reference	Structure-guided engineering of the regioselectivity of RNA ligase ribozymes., Pitt JN, Ferre-D'Amare AR, J Am Chem Soc. 2009 Mar 18;131(10):3532-40. PMID:19220054

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk] Biological Unit Coordinates (3fs0.pdb1.gz) 10 Kb LPC: Ligand-Protein Contacts for 3FS0 CSU: Contacts of Structural Units for 3FS0 Likely Quarternary Molecular Structure file(s) for 3FS0 Structure Factors (29 Kb) Retrieve 3FS0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FS0 from S2C, [Save to disk] Re-refined 3fs0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FS0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FS0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FS0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fs0_A] [3fs0_B] [3fs0] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3FS0

Community annotation for 3FS0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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