3FTP Oxidoreductase date Jan 13, 2009
title Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reduc Burkholderia Pseudomallei At 2.05 A Resolution
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: 3-Oxoacyl-[Acyl-Carrier Protein] Reductase
Chain: A, B, C, D
Ec: 1.1.1.100
Engineered: Yes
Organism_scientific: Burkholderia Pseudomallei
Organism_common: Pseudomonas Pseudomallei
Organism_taxid: 28450
Strain: 1710b
Gene: Fabg, Bpsl2440
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ava0421
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.620 89.900 120.240 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand
enzyme Oxidoreductase E.C.1.1.1.100 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCombining functional and structural genomics to sample the essential Burkholderia structome., Baugh L, Gallagher LA, Patrapuvich R, Clifton MC, Gardberg AS, Edwards TE, Armour B, Begley DW, Dieterich SH, Dranow DM, Abendroth J, Fairman JW, Fox D 3rd, Staker BL, Phan I, Gillespie A, Choi R, Nakazawa-Hewitt S, Nguyen MT, Napuli A, Barrett L, Buchko GW, Stacy R, Myler PJ, Stewart LJ, Manoil C, Van Voorhis WC, PLoS One. 2013;8(1):e53851. doi: 10.1371/journal.pone.0053851. Epub 2013 Jan 31. PMID:23382856
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (3ftp.pdb1.gz) 145 Kb
  • CSU: Contacts of Structural Units for 3FTP
  • Likely Quarternary Molecular Structure file(s) for 3FTP
  • Structure Factors (870 Kb)
  • Retrieve 3FTP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FTP from S2C, [Save to disk]
  • Re-refined 3ftp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FTP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FTP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FTP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ftp_A] [3ftp_B] [3ftp_D] [3ftp_C] [3ftp]
  • SWISS-PROT database: [Q3JQ67]
  • Domain organization of [Q3JQ67_BURP1] by SWISSPFAM
  • Other resources with information on 3FTP
  • Community annotation for 3FTP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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