3FUX Transferase date Jan 14, 2009
title T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase ( Complex With 5'-Methylthioadenosine In Space Group P212121
authors H.Demirci, R.Belardinelli, E.Seri, S.T.Gregory, C.Gualerzi, A.E.D G.Jogl
compound source
Molecule: Dimethyladenosine Transferase
Chain: A, B, C
Synonym: S-Adenosylmethionine-6-N', N'-Adenosyl(Rrna) Dimethyltransferase, 16s Rrna Dimethylase, High Level Kasug Resistance Protein Ksga, Kasugamycin Dimethyltransferase;
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Gene: Ksga, Ttha0083
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.056 79.908 186.436 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand MTA enzyme Transferase E.C.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • rRNA (adenine-N6,N6-)-dimeth...
  • rRNA methyltransferase activ...
  • rRNA (adenine) methyltransfe...
  • 16S rRNA (adenine(1518)-N(6)...


  • Primary referenceStructural Rearrangements in the Active Site of the Thermus thermophilus 16S rRNA Methyltransferase KsgA in a Binary Complex with 5'-Methylthioadenosine., Demirci H, Belardinelli R, Seri E, Gregory ST, Gualerzi C, Dahlberg AE, Jogl G, J Mol Biol. 2009 Mar 12. PMID:19285505
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (3fux.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (3fux.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (3fux.pdb3.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3FUX
  • CSU: Contacts of Structural Units for 3FUX
  • Likely Quarternary Molecular Structure file(s) for 3FUX
  • Structure Factors (1364 Kb)
  • Retrieve 3FUX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FUX from S2C, [Save to disk]
  • Re-refined 3fux structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FUX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FUX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FUX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fux_C] [3fux] [3fux_A] [3fux_B]
  • SWISS-PROT database: [Q5SM60]
  • Domain organization of [RSMA_THET8] by SWISSPFAM
  • Domain found in 3FUX: [rADc ] by SMART
  • Other resources with information on 3FUX
  • Community annotation for 3FUX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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