3FV1	Membrane Protein	date	Jan 15, 2009
title	Crystal Structure Of The Human Glutamate Receptor, Glur5, Li Binding Core In Complex With Dysiherbaine In Space Group P1
authors	M.Unno, M.Sasaki, M.Ikeda-Saito
compound		source
Molecule: Glutamate Receptor, Ionotropic Kainate 1 Chain: A, B Fragment: Ligand-Binding Domain, Unp Residues 445-559, 682- Synonym: Glutamate Receptor 5, Glur-5, Glur5, Excitatory Am Receptor 3, Eaa3; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcold-1
symmetry	Space Group: P 1	R_factor 0.171 R_Free 0.189
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.486 50.740 63.252 80.08 84.18 62.06
method	X-Ray Diffraction	resolution	1.50 Å
ligand	DYH, GOL, SO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Binding and Selectivity of the Marine Toxin Neodysiherbaine A and Its Synthetic Analogues to GluK1 and GluK2 Kainate Receptors., Unno M, Shinohara M, Takayama K, Tanaka H, Teruya K, Doh-Ura K, Sakai R, Sasaki M, Ikeda-Saito M, J Mol Biol. 2011 Oct 28;413(3):667-83. Epub 2011 Aug 26. PMID:21893069

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk] Biological Unit Coordinates (3fv1.pdb1.gz) 87 Kb Biological Unit Coordinates (3fv1.pdb2.gz) 89 Kb Biological Unit Coordinates (3fv1.pdb3.gz) 173 Kb LPC: Ligand-Protein Contacts for 3FV1 CSU: Contacts of Structural Units for 3FV1 Structure Factors (564 Kb) Retrieve 3FV1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FV1 from S2C, [Save to disk] Re-refined 3fv1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FV1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FV1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FV1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fv1_A] [3fv1_B] [3fv1] SWISS-PROT database: [P39086] Domain organization of [GRIK1_HUMAN] by SWISSPFAM Domains found in 3FV1: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART

Other resources with information on 3FV1

Community annotation for 3FV1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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