3FVO Membrane Protein date Jan 16, 2009
title Crystal Structure Of The Human Glutamate Receptor, Glur5, Li Binding Core In Complex With 8-Epi-Neodysiherbaine A In Spa P1
authors M.Unno, M.Sasaki, M.Ikeda-Saito
compound source
Molecule: Glutamate Receptor, Ionotropic Kainate 1
Chain: A, B
Fragment: Ligand-Binding Domain, Unp Residues 445-559, 682-
Synonym: Glutamate Receptor 5, Glur-5, Glur5, Excitatory Am Receptor 3, Eaa3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcold-1
symmetry Space Group: P 1
R_factor 0.165 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.717 50.756 63.290 94.19 95.90 117.95
method X-Ray Diffractionresolution 1.50 Å
ligand 8EP, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (3fvo.pdb1.gz) 88 Kb
  • Biological Unit Coordinates (3fvo.pdb2.gz) 90 Kb
  • Biological Unit Coordinates (3fvo.pdb3.gz) 175 Kb
  • LPC: Ligand-Protein Contacts for 3FVO
  • CSU: Contacts of Structural Units for 3FVO
  • Structure Factors (574 Kb)
  • Retrieve 3FVO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FVO from S2C, [Save to disk]
  • Re-refined 3fvo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FVO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FVO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FVO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fvo_B] [3fvo] [3fvo_A]
  • SWISS-PROT database: [P39086]
  • Domain organization of [GRIK1_HUMAN] by SWISSPFAM
  • Domains found in 3FVO: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART
  • Other resources with information on 3FVO
  • Community annotation for 3FVO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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