3FY5	Protein Binding	date	Jan 21, 2009
title	Dishevelled Pdz Domain Homodimer
authors	T.Earnest, N.Friedland, L.W.Hung, R.Moon
compound		source
Molecule: Segment Polarity Protein Dishevelled Homolog Dvl- 2; Chain: A, B Synonym: Dishevelled-2, Dsh Homolog 2, Xdsh Engineered: Yes		Organism_scientific: Xenopus Laevis Organism_common: Clawed Frog,Common Platanna,Platanna Organism_taxid: 8355 Gene: Dsh, Dvl2 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 61 2 2	R_factor 0.229 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.198 96.198 93.557 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	MSE	enzyme
note	3FY5 is a representative structure
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk] Biological Unit Coordinates (3fy5.pdb1.gz) 28 Kb Biological Unit Coordinates (3fy5.pdb2.gz) 26 Kb LPC: Ligand-Protein Contacts for 3FY5 CSU: Contacts of Structural Units for 3FY5 Structure Factors (144 Kb) Retrieve 3FY5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FY5 from S2C, [Save to disk] Re-refined 3fy5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FY5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FY5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FY5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fy5_B] [3fy5_A] [3fy5] SWISS-PROT database: [P51142] Domain organization of [DVL2_XENLA] by SWISSPFAM Domain found in 3FY5: [PDZ ] by SMART

Other resources with information on 3FY5

Community annotation for 3FY5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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