3FYC	Transferase	date	Jan 22, 2009
title	Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi
authors	J.N.Scarsdale, F.N.Musayev, J.P.Rife
compound		source
Molecule: Probable Dimethyladenosine Transferase Chain: A, B Synonym: S-Adenosylmethionine-6-N',N'-Adenosyl(Rrna) Dimethyltransferase, 16s Rrna Dimethylase; Ec: 2.1.1.- Engineered: Yes		Organism_scientific: Methanocaldococcus Jannaschii Organism_common: Methanococcus Jannaschii Organism_taxid: 2190 Gene: Ksga, Mj1029 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 1 21 1	R_factor 0.202 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.384 72.274 95.883 90.00 91.87 90.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	PO4	enzyme	Transferase E.C.2.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural and Functional Divergence within the Dim1/KsgA Family of rRNA Methyltransferases., Pulicherla N, Pogorzala LA, Xu Z, O Farrell HC, Musayev FN, Scarsdale JN, Sia EA, Culver GM, Rife JP, J Mol Biol. 2009 Jun 9. PMID:19520088

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk] Biological Unit Coordinates (3fyc.pdb1.gz) 47 Kb Biological Unit Coordinates (3fyc.pdb2.gz) 47 Kb LPC: Ligand-Protein Contacts for 3FYC CSU: Contacts of Structural Units for 3FYC Likely Quarternary Molecular Structure file(s) for 3FYC Structure Factors (239 Kb) Retrieve 3FYC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FYC from S2C, [Save to disk] Re-refined 3fyc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FYC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FYC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FYC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fyc_B] [3fyc] [3fyc_A] SWISS-PROT database: [Q58435] Domain organization of [RSMA_METJA] by SWISSPFAM Domain found in 3FYC: [rADc ] by SMART

Other resources with information on 3FYC

Community annotation for 3FYC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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