3FYG Transferase date Aug 07, 1997
title Crystal Structure Of Tetradeca-(3-Fluorotyrosyl)-Glutathione Transferase
authors G.Xiao, J.F.Parsons, R.N.Armstrong, G.L.Gilliland
compound source
Molecule: Mu Class Tetradeca-(3-Fluorotyrosyl)-Glutathione Transferase Of Isoenzyme;
Chain: A, B
Synonym: Rat Gst
Ec: 2.5.1.18
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Cell_line: Bl21
Organ: Liver
Gene: Cdna Insert Of Clone Pgt33m
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: T7
Expression_system_plasmid: Psw1gst33
Expression_system_gene: Cdna Insert Of Clone Pgt33m
symmetry Space Group: P 21 21 2
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.430 88.420 57.260 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GPR, YOF enzyme Transferase E.C.2.5.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceConformational changes in the crystal structure of rat glutathione transferase M1-1 with global substitution of 3-fluorotyrosine for tyrosine., Xiao G, Parsons JF, Tesh K, Armstrong RN, Gilliland GL, J Mol Biol 1998 Aug 14;281(2):323-39. PMID:9698551
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3fyg.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 3FYG
  • CSU: Contacts of Structural Units for 3FYG
  • Likely Quarternary Molecular Structure file(s) for 3FYG
  • Structure Factors (169 Kb)
  • Retrieve 3FYG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3FYG from S2C, [Save to disk]
  • Re-refined 3fyg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3FYG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3FYG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3FYG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3fyga2, region A:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d3fyga1, region A:85-217 [Jmol] [rasmolscript] [script source]
        - Domain d3fygb2, region B:1-84 [Jmol] [rasmolscript] [script source]
        - Domain d3fygb1, region B:85-217 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3fyg_A] [3fyg] [3fyg_B]
  • SWISS-PROT database: [P04905]
  • Domain organization of [GSTM1_RAT] by SWISSPFAM
  • Other resources with information on 3FYG
  • Community annotation for 3FYG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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