3FZN	Lyase	date	Jan 26, 2009
title	Intermediate Analogue In Benzoylformate Decarboxylase
authors	M.Bruning, M.Berheide, D.Meyer, R.Golbik, H.Bartunik, A.Liese, K.T
compound		source
Molecule: Benzoylformate Decarboxylase Chain: A, B, C, D Synonym: Bfd, Bfdc Ec: 4.1.1.7 Engineered: Yes		Organism_scientific: Pseudomonas Putida Organism_taxid: 303 Gene: Mdlc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Sg13009 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbfdtrc
symmetry	Space Group: P 1	R_factor 0.170 R_Free 0.203
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.510 93.344 94.525 63.46 72.82 73.21
method	X-Ray Diffraction	resolution	1.62 Å
ligand	CL, D7K, MG, PEG, PO4	enzyme	Lyase E.C.4.1.1.7 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural and kinetic studies on native intermediates and an intermediate analogue in benzoylformate decarboxylase reveal a least motion mechanism with an unprecedented short-lived predecarboxylation intermediate., Bruning M, Berheide M, Meyer D, Golbik R, Bartunik H, Liese A, Tittmann K, Biochemistry. 2009 Apr 21;48(15):3258-68. PMID:19182954

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (371 Kb) [Save to disk] Biological Unit Coordinates (3fzn.pdb1.gz) 363 Kb LPC: Ligand-Protein Contacts for 3FZN CSU: Contacts of Structural Units for 3FZN Likely Quarternary Molecular Structure file(s) for 3FZN Structure Factors (4151 Kb) Retrieve 3FZN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3FZN from S2C, [Save to disk] Re-refined 3fzn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3FZN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3FZN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3FZN, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3fzn_B] [3fzn_A] [3fzn] [3fzn_C] [3fzn_D] SWISS-PROT database: [P20906] Domain organization of [MDLC_PSEPU] by SWISSPFAM

Other resources with information on 3FZN

Community annotation for 3FZN at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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