3G0V Viral Protein date Jan 29, 2009
title Crystal Structure Of The C-Terminal Domain From The Rous Sar Capsid Protein: Mutant D179a
authors R.L.Kingston
compound source
Molecule: Gag Polyprotein
Chain: A
Fragment: C-Terminal Domain, Unp Residues 389-465
Synonym: Capsid Protein
Ec: 3.4.23.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Rous Sarcoma Virus
Organism_common: Rsv-Prc
Organism_taxid: 11888
Strain: Prague C Strain
Gene: Gag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptyb11
symmetry Space Group: C 2 2 21
R_factor 0.197 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.763 76.708 32.515 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand NO3 enzyme Hydrolase E.C.3.4.23 BRENDA
Primary referenceProton-linked dimerization of a retroviral capsid protein initiates capsid assembly., Bailey GD, Hyun JK, Mitra AK, Kingston RL, Structure. 2009 May 13;17(5):737-48. PMID:19446529
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (3g0v.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 3G0V
  • CSU: Contacts of Structural Units for 3G0V
  • Likely Quarternary Molecular Structure file(s) for 3G0V
  • Structure Factors (104 Kb)
  • Retrieve 3G0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G0V from S2C, [Save to disk]
  • Re-refined 3g0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G0V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G0V, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g0v_A] [3g0v]
  • SWISS-PROT database: [P03322]
  • Domain organization of [GAG_RSVP] by SWISSPFAM
  • Other resources with information on 3G0V
  • Community annotation for 3G0V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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