3G3G Membrane Protein date Feb 02, 2009
title Crystal Structure Of The Glur6 Ligand Binding Domain Dimer K Mutant With Glutamate And Nacl At 1.3 Angstrom Resolution
authors C.Chaudhry, M.L.Mayer
compound source
Molecule: Glutamate Receptor, Ionotropic Kainate 2
Chain: A, B
Fragment: Residues 429-544, 667-806
Synonym: Glutamate Receptor 6, Glur-6, Glur6
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_taxid: 10116
Gene: Grik2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Origamib (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b Modified
symmetry Space Group: P 1 21 1
R_factor 0.146 R_Free 0.168
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.990 113.532 52.022 90.00 115.24 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand CL, GLU, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStability of ligand-binding domain dimer assembly controls kainate receptor desensitization., Chaudhry C, Weston MC, Schuck P, Rosenmund C, Mayer ML, EMBO J. 2009 May 20;28(10):1518-30. Epub 2009 Apr 2. PMID:19339989
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (3g3g.pdb1.gz) 179 Kb
  • LPC: Ligand-Protein Contacts for 3G3G
  • CSU: Contacts of Structural Units for 3G3G
  • Likely Quarternary Molecular Structure file(s) for 3G3G
  • Structure Factors (1061 Kb)
  • Retrieve 3G3G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G3G from S2C, [Save to disk]
  • Re-refined 3g3g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G3G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G3G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G3G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g3g_B] [3g3g] [3g3g_A]
  • SWISS-PROT database: [P42260]
  • Belongs to the glutamate-gated ion channel (gic) family of neurotransmitter receptors according to TCDB.
  • Domain organization of [GRIK2_RAT] by SWISSPFAM
  • Domains found in 3G3G: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART
  • Other resources with information on 3G3G
  • Community annotation for 3G3G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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