3G5C Membrane Protein date Feb 04, 2009
title Structural And Biochemical Studies On The Ectodomain Of Huma
authors H.Liu, A.Shim, X.Chen, X.He
compound source
Molecule: Adam 22
Chain: A, B
Fragment: M, D, C And E Domains
Synonym: A Disintegrin And Metalloproteinase Domain 22, Metalloproteinase-Like, Disintegrin-Like, And Cysteine-Rich 2, Metalloproteinase-Disintegrin Adam22-3;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam22, Mdc2
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_vector: Plasmid
Expression_system_plasmid: Pacgp67a
symmetry Space Group: H 3
R_factor 0.245 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
122.090 122.090 208.690 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.36 Å
ligand CA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (3g5c.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (3g5c.pdb2.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 3G5C
  • CSU: Contacts of Structural Units for 3G5C
  • Structure Factors (441 Kb)
  • Retrieve 3G5C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3G5C from S2C, [Save to disk]
  • Re-refined 3g5c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3G5C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3G5C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3G5C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3g5c_A] [3g5c_B] [3g5c]
  • SWISS-PROT database: [Q9P0K1]
  • Domain organization of [ADA22_HUMAN] by SWISSPFAM
  • Domains found in 3G5C: [ACR] [DISIN] [EGF ] by SMART
  • Other resources with information on 3G5C
  • Community annotation for 3G5C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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